Genome Inspector, GIN, was devised to design primers within microbial species or genus as broad as possible, for PCR gene-screening projects.It uses BLAST to find DNA sequences highly similar to the gene or sequence chosen by the user, in complete sequenced microbial genomes (GenBank format only). When an identical match is found, it draws a circular map showing the position of the highest score match, registers its position on a table and shows the BLAST alignments. The sequences found by BLAST will be used to perform a multiple sequence comparison by log-expectation (MUSCLE). The user will easily evaluate if the conserved found sequences will give, or not, broad range primers depending on the % of genomes in the multiple alignment.
All features aren't available when using the guest account. If you want register in GIN 2.0 go to Login, in the top
of page, and register it's free, and you are available to make your own projects with your wanted genomes.

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Welcome to GIN 2.0 version trial

In this area is possible to test some of the potencial that GIN 2.0 can offer you.

Choose, in the column at the left, the option to start your analysis.

Sequence Analysis

Sequence Region Analysis

Gene Analysis